Bowtie 1

note

Ultrafast, memory-efficient short read aligner.

http://bowtie-bio.sourceforge.net/

File search patterns

bowtie1:
  contents: '# reads processed:'
  exclude_fn:
  - bowtie.left_kept_reads.log
  - bowtie.left_kept_reads.m2g_um.log
  - bowtie.left_kept_reads.m2g_um_seg1.log
  - bowtie.left_kept_reads.m2g_um_seg2.log
  - bowtie.right_kept_reads.log
  - bowtie.right_kept_reads.m2g_um.log
  - bowtie.right_kept_reads.m2g_um_seg1.log
  - bowtie.right_kept_reads.m2g_um_seg2.log
  shared: true