Changelog

The MultiQC v1.32 release features one major change:

• Bootstrap upgrade and DARK MODE (#3264)

This has been brewing for a long time, and is a large rewrite of how MultiQC HTML / CSS and JS is written and packaged.

MultiQC now supports simple theming with Bootstrap color modes, and the updated default template ships with both light- and dark-mode by default 😎.

The old template is still available, but has been renamed to original.

Feature updates and improvements​

• Update Wave use cases and FAQ by @christopher-hakkaart in #917
• Upgrade Netty to 4.2.5. final to fix CVE-2025-58057 by @jordeu in #920
• Refactor MoshiEncodeStrategy to remove Wave-specific polymorphic type adapters by @pditommaso in #922

Full changelog: https://github.com/seqeralabs/wave/compare/v1.26.0...v1.26.1

General updates and improvements​

• Seqera Compute
  • Updated documentation on free credit entitlement and management.
• Platform
  • Added a copy button to data display chips, allowing you to quickly copy displayed values to your clipboard.
  • Added an improved onboarding flow for Seqera Compute customers to quickly run pipelines.
• Pipelines
  • Added support for pinning the HEAD commit ID of the chosen revision to guarantee deterministic pipeline execution.
• Data Explorer
  • Added support for image preview and file upload in Data Explorer when using Amazon S3-compatible API storage (for example, but not limited to, Cloudflare R2, MinIO, and Oracle Cloud).
  • Added support for MinIO object storage in Data Explorer, enabling users to browse, upload, and download files from MinIO instances using S3-compatible credentials.
• Added the ability to read task logs on Azure Cloud from Azure Blob Storage after pipeline completion, ensuring logs remain accessible throughout the entire task lifecycle.
• Updated the nf-launcher container versions from 25.04.6 to 25.04.8 for both standard and Docker-in-Docker variants.
• Updated the default Seqera AMI version to 0.0.10 for both AMD64 and ARM64 architectures in AWS Cloud deployments.

Bug fixes​

• Fixed an issue where resuming pipelines failed due to incorrect identification of launchable entity types.
• Fixed issues where version name autogeneration used incorrect defaults and navigation returned users to the wrong page when editing pipeline versions.
• Fixed an issue where users with Launch permissions could not access Studios due to insufficient workspace settings permissions.
• Fixed an issue where administrators could accidentally create duplicate user accounts due to differences in email address casing.

Feature updates and improvements​

• Add ARM64 platform support to container build by @pditommaso in #911
• Add security scanning for Nextflow plugins in OCI registries by @munishchouhan in #912
• Bump Micronaut to version 4.9.4 by @pditommaso in b056aff

Full changelog: https://github.com/seqeralabs/wave/compare/v1.25.2...v1.26.0

General updates and improvements​

• Platform
  • Enhanced dataset management with an updated details page.
  • Added the ability to hide/show datasets and disable specific dataset versions for better dataset lifecycle management.
  • Added support for dataset labels to improve organization and categorization of datasets within workspaces.
  • Added the ability to filter pipeline runs by dataset ID using the datasetId: search keyword, improving traceability between datasets and workflows.

Bug fixes​

• Fixed an issue where errors for deleted or invalid pipeline revisions appeared on the wrong field, making them difficult to identify and resolve.

New features and improvements​

• Studios
  • Added three new configuration parameters for customizing Docker image naming conventions in Studios Wave integration.
  • Added eStarGZ support for Studios with conda packages.
• Platform
  • Introduced multiple improvements to the Usage Overview to simplify compute usage tracking.
  • Added automatic memory tracking for billing to automatically capture actual memory usage for tasks without explicit memory limits, ensuring accurate consumption tracking.
• Pipelines
• retries and ignored status task counts are now included in progress response when a workflow is finalized.
• Improved loading time for pipeline details (up to 700ms improvement) for repositories like nf-core/rnaseq. This resolves timeout issues when launching pipelines.

Bug fixes​

• Fixed a missing newline in the includeCustomUserConfig method and resolved an issue where where custom config includeConfig statements were improperly concatenated, causing syntax errors when parsed.

Feature updates and improvements​

• Add ARM64 platform support to container build by @pditommaso in #911

Full changelog: https://github.com/seqeralabs/wave/compare/v1.25.1...v1.25.2

General updates and improvements​

• Fusion
  • Added FSx Lustre support for Amazon Linux 2023 AMIs with automatic fallback from the Amazon Linux 2 installation method.
• Platform API
  • Added an optional maxLength query parameter to workflow log endpoints (GET /{workflowId}/log and GET /{workflowId}/log/{taskId}) for improved log management.
  • Added the managed identity and managed credentials endpoint to Seqera Platform API documentation.
• Improved warning messages in Seqera Platform when workflows are cancelled or Studios are stopped due to insufficient credits.
• Removed the role check to show organization member mail, so organization owners can now view member and collaborator emails.
• Added user tracking fields to datasets and dataset versions. Datasets now include a lastUpdatedBy field to track the user who last modified the dataset, while dataset versions include a createdBy field to track the user who created each version.
• Improved the visual consistency and user experience across workflow run interfaces. Updates include improved table borders, enhanced tooltip information, and refined pagination layouts in the containers view.

Feature updates and improvements​

• Remove unused env from jib task definition by @pditommaso in 3471824
• Replace deprecated AppArmor annotation with securityContext field by @pditommaso in #896
• Remove app encoded values for Seqera environment @munishchouhan in #893
• Bump BuildKit to version 0.23.2 in tests @munishchouhan in #894
• Bump MN to version 4.9.3 by @pditommaso in 03b98e8
• Bump BuildKit to version 0.23.2 by @pditommaso in f31316d
• Bump corretto-25-al2023-mimalloc as base image by @pditommaso in 46a6e2a

Full changelog: https://github.com/seqeralabs/wave/compare/v1.25.0...v1.25.1

Adding new module for Xenium analysis, 10x Genomics Xenium spatial transcriptomics quality control report.

The parquet format is stable since 1.29, renaming the output file from BETA-multiqc.parquet to multiqc.parquet.